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Research Scientist/Engineer 1
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Job Description
- Req#: REQ-0000128046
Employer Industry: Higher Education Research
Why consider this job opportunity:
- Salary up to $70,008 annually
- Opportunity for career advancement and growth within the organization
- Work in a collaborative and intellectually stimulating environment
- Engage in impactful research that contributes to disease-focused analyses
- Access to comprehensive benefits and professional development resources
What to Expect (Job Responsibilities):
- Perform end-to-end data processing including demultiplexing, quality trimming, and alignment/quantification
- Build and validate spatial barcode maps for Pixel-seq and conduct error correction
- Conduct segmentation and quality control using tools like Cellpose and maintain curated masks
- Execute downstream single-cell and spatial analysis, including normalization and clustering
- Implement and maintain reproducible workflows using Snakemake or Nextflow
What is Required (Qualifications):
- Bachelor's Degree in Computer Science, Applied Mathematics, Bioinformatics, Computational Biology, or Electrical and Computer Engineering
- Minimum of one year of relevant experience in computational biology or bioinformatics
- Proficiency in programming with Python (numpy/pandas), basic R, and bash; familiarity with Git and Linux
- Experience in NGS data processing, including BCL to FASTQ demultiplexing and quality control
- Knowledge of spatial omics concepts and the creation of spatially annotated data objects
How to Stand Out (Preferred Qualifications):
- Experience with probabilistic modeling techniques such as scVI or totalVI
- Familiarity with GPU usage for segmentation and model inference using PyTorch/CUDA
- Background in data stewardship and monitoring tools like DVC or Prometheus/Grafana
- Coursework or research experience in biochemistry or genetics
- Experience collaborating with IT on server upgrades and high-throughput data management
#HigherEducation #ComputationalBiology #Bioinformatics #ResearchOpportunity #CareerGrowth
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